URL: http://bcr.musc.edu/
Last modified: November 11, 2003- ESH e-mail to Starr comments about this page.
Exon 1 Hardware software recommendations
Exon 2 This file is a postscript formatted file. Save and print to laserwriter to use. Account application form -free.
Exon 3 Gopher BookMarks/Mosaic Hotlists
Exon 4 Finding Sequence Information
Exon 5 Starting Local BCR Resources GCG ATLAS
Exon 6 GCG Graphics modes
Exon 7 Simple UNIX commands
Exon 8 Basic UNIX commands for the VI editor
Exon 9 Sequence entry
Exon 10 Fragment Assembly /Sequencing Project Manager
Exon 11 FAST/BLAST Searches
Exon 12 Creating Local Database for BLAST and FASTA
Exon 13 The GCG sequence editors SEQED, LINEUP, GELASSEMBLE
Exon 14 The GCG GUI: Wisconson Package Interface WPI
Exon 15 Transferring files from your old VAX Account
Exon 16 Printing files from the UNIX system
Exon 17 Five Common Tasks made easy
Exon 18 Filling Out a UNIX Account form to allow access to the BCR
Exon 19 Starting Molecular modeling software of the BCR
Exon 20 Other assorted UNIXisms.
Exon 21 Running CLUSTALW at MUSC.
ClustalW-Manual for Multiple AlignmentCLUSTALW-MANUAL
Exon 22 PHYLIP at MUSC.
Here's Joe Felsenstein's (the author of the PHYLIP) programs Home Page. PHYLIP
Exon 23 DockVision at MUSC.
Here's the DockVision Home Page. DockVisionHelp
Here's a DockVisionCookbook
Exon 24 UCSF Dock v 4 at MUSC.
Here's the Dock Manual in PDF. Dock Manual
Here's a DockFAQFAQ
Exon 25 LINKAGE Analysis programs at MUSC.
Exon 26 Brief introduction to using SEQWEB at MUSC.
Exon 27 Primer design at MUSC.
Exon 28 eXodus,eXceed and MiX-x-server clients at MUSC.
Exon 29 Accees to the relational databases at NCBI via ENTREZ at MUSC.
Exon 30 NCBI's SEQUIN program at MUSC-Automated forms for Submiting your sequences to GenBank.
Exon 31 Running the version 3 FASTA programs at MUSC.
Exon 32 The GeneRunner program at MUSC.
Exon 33 Running DNASTRIDER at MUSC.
Exon 34 Running SEQUENCHER at MUSC.
Exon 35 Running the FASTDNAML program at MUSC.
Exon 36 Running Rod Page's TREEVIEW program at MUSC.
Exon 37 Running NCBI's MACAW at MUSC.
Exon 38 Running and using RASMOL and CHIME at MUSC.
Exon 39 Running the ACS program NANOVISION at MUSC.
Exon 40 Running SPARTAN and MACSPARTAN at MUSC.
Exon 41 Running the SwissPDBViewer at MUSC.
Exon 42 Running HYPERCHEM at MUSC.
Exon 43 Running Alchemy 2000 at MUSC.
Exon 45 Running Gaussian98 at MUSC.
Exon 46 Running the AMBER6 programs at MUSC.
Exon 47 Running GROMOS96 programs at MUSC.
Exon 48 Running the JAGUAR program at MUSC.
Exon 49 Running the DNASTACKS program at MUSC.
Exon 50 Running the Babel program at MUSC.
Exon 51 Set up and running the Viseur program at MUSC.
Exon 52 Set up and running the Look/GeneMine program at MUSC.
Exon 53 Set up and running the GRAMM program at MUSC.
Exon 54 Set up and running the ESPript program at MUSC.
Exon 55 Set up and running the HMM program at MUSC.
Exon 56 Set up and running the Sanger Centre Image 3.9 program at MUSC.
Exon 57 Set up and running the Sanger Centre FPC program at MUSC.
Exon 58 Set up and running The Scripps Research Institute AutoDock program at MUSC.
Exon 59 Set up and running LCP,LSP and LRP- Linkage Auxilliary programs at MUSC.
Exon 60 Set up and running PUZZLE program at MUSC.
Exon 61 Set up and running PAML program at MUSC.
Exon 62 Set up and running MOLPHY program at MUSC.
Exon 63 Set up and running QTDT program at MUSC.
Exon 64 Running the PDB2VRML program at MUSC.
Exon 65 Running the EMBOSS programs at MUSC.
Exon 66 Running the SOLAR programs at MUSC.
Exon 67 Running the Schrodinger programs JAGUAR,MAESTRO,MACROMODEL,MOPAC200 at MUSC.
Exon 68 Running the Sali Lab program Modeller4 at MUSC.
Exon 69 Running the Brun Lab program Sequoia at MUSC.
Exon 70 Running the GRASP program at MUSC.
Exon 71 Running the DELPHI program at MUSC.
Exon 72 Running the MACVector program at MUSC.
Exon 73 Running the VectorNTI program at MUSC.
Exon 74 Running the CONSED, PHRED and PHRAP programs at MUSC.
The BCR at the Medical University of South Carolina
URL: http://bcr.musc.edu/
e-mail to Starr comments about this page.