Exons:
Relevant bits of information for using the MUSC Shared Resource,
 the BioMolecular Computing Resource (BCR).

Exon_69 Brun Lab Sequoia Program at MUSC.
 Sequoia
version 0.9.7 May 2000 Copyright © 1995-2000 
Christopher M. Bruns Ph.D., All rights reserved 


"SEQUOIA is a computer program for the alignment of homologous 
protein sequences, and for the superpostion of homologous protein
atomic coordinates." 

The first thing you do is consult the on-line manual. Sequoia
may be run from command line or run from scripts. 
There is no GUI for Sequoia. Your best bet is to 

read the MANUAL FIRST!!!!. The latest version of this document 
is available at http://www.scripps.edu/~bruns/sequoia.html 

Sequoia reads fasta format file sequence files and PDB format 
structure files

You should be able to type

sequoia

and the program will launch giving you a sequoia command line 
like this

sequoia>

At which point you need to enter commands like READ, ALIGN etc. (see 
manual fo a tutorial.

Good Luck!

   
 

The BCR at the Medical University of South Carolina
URL: http://bcr.musc.edu/
Last modified: May 18, 2001- ESH

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