Mandatory qualifiers:
  [-sequence]          seqall     Sequence database USA
   -window             integer    Window size
  [-outfile]           outfile    Output file name

   Optional qualifiers: (none)
   Advanced qualifiers:
   -[no]coil           boolean    Report coiled coil regions
   -frame              boolean    Show coil frameshifts
   -[no]other          boolean    Report non coiled coil regions

   General qualifiers:
  -help                boolean    Report command line options. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose

ID   GCN4_YEAST     STANDARD;      PRT;   281 AA.
AC   P03069; P03068;
DT   21-JUL-1986 (Rel. 01, Created)
DT   21-JUL-1986 (Rel. 01, Last sequence update)
DT   15-JUL-1999 (Rel. 38, Last annotation update)
DE   GENERAL CONTROL PROTEIN GCN4 (AMINO ACID BIOSYNTHESIS REGULATORY
DE   PROTEIN).
GN   GCN4 OR ARG9 OR AAS3 OR YEL009C.
OS   Saccharomyces cerevisiae (Baker's yeast).
OC   Eukaryota; Fungi; Ascomycota; Hemiascomycetes; Saccharomycetales;
OC   Saccharomycetaceae; Saccharomyces.
RN   [1]
RP   SEQUENCE FROM N.A.
RX   MEDLINE; 85038531.
RA   HINNEBUSCH A.G.;
RT   "Evidence for translational regulation of the activator of general
RT   amino acid control in yeast.";
RL   Proc. Natl. Acad. Sci. U.S.A. 81:6442-6446(1984).
RN   [2]
RP   SEQUENCE FROM N.A.
RX   MEDLINE; 84298088.
RA   THIREOS G., PENN M.D., GREER H.;
RT   "5' untranslated sequences are required for the translational control
RT   of a yeast regulatory gene.";
RL   Proc. Natl. Acad. Sci. U.S.A. 81:5096-5100(1984).
RN   [3]
RP   SEQUENCE FROM N.A.
RC   STRAIN=S288C / AB972;
RA   DIETRICH F.S., MULLIGAN J.T., HENNESSEY K.M., ALLEN E., ARAUJO R.,
RA   AVILES E., BERNO A., BRENNAN T., CARPENTER J., CHEN E., CHERRY J.M.,
RA   CHUNG E., DUNCAN M., GUZMAN E., HARTZELL G., HUNICKE-SMITH S.,
RA   HYMAN R., KAYSER A., KOMP C., LASHKARI D., LEW H., LIN D.,
RA   MOSEDALE D., NAKAHARA K., NAMATH A., NORGREN R., OEFNER P., OH C.,
RA   PETEL F.X., ROBERTS D., SEHL P., SCHRAMM S., SHOGREN T., SMITH V.,
RA   TAYLOR P., WEI Y., YELTON M., BOTSTEIN D., DAVIS R.W.;
RL   Submitted (DEC-1994) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   DOMAINS.
RX   MEDLINE; 87002456.
RA   HOPE I.A., STRUHL K.;
RT   "Functional dissection of a eukaryotic transcriptional activator
RT   protein, GCN4 of yeast.";
RL   Cell 46:885-894(1986).
RN   [5]
RP   X-RAY CRYSTALLOGRAPHY (1.8 ANGSTROMS) OF 250-281.
RX   MEDLINE; 92054531.
RA   O'SHEA E.K., KLEMM J.D., KIM P.S., ALBER T.;
RT   "X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel
RT   coiled coil.";
RL   Science 254:539-544(1991).


  [Part of this file has been deleted for brevity]

CC   -!- SUBCELLULAR LOCATION: NUCLEAR.
CC   -!- SIMILARITY: TO OTHER BZIP PROTEINS.
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DR   EMBL; K02205; AAA34640.1; -.
DR   EMBL; K02649; AAA65521.1; -.
DR   EMBL; U18530; AAB64486.1; -.
DR   PIR; A03604; RGBYA1.
DR   PIR; A03605; RGBYA2.
DR   PDB; 1ZTA; 15-APR-93.
DR   PDB; 2ZTA; 15-OCT-92.
DR   PDB; 1YSA; 31-OCT-93.
DR   PDB; 1DGC; 22-JUN-94.
DR   PDB; 2DGC; 08-MAR-96.
DR   PDB; 1GCL; 03-JUN-95.
DR   PDB; 1GCM; 29-JAN-96.
DR   PDB; 1SWI; 08-NOV-96.
DR   PDB; 1ZII; 07-JUL-97.
DR   PDB; 1ZIJ; 07-JUL-97.
DR   PDB; 1ZIK; 07-JUL-97.
DR   PDB; 1ZIL; 07-JUL-97.
DR   PDB; 1ZIM; 07-JUL-97.
DR   PDB; 1PIQ; 30-SEP-98.
DR   PDB; 1CE9; 25-MAR-99.
DR   TRANSFAC; T00321; -.
DR   SGD; L0000683; GCN4.
DR   PFAM; PF00170; bZIP; 1.
DR   PROSITE; PS00036; BZIP_BASIC; 1.
KW   Amino-acid biosynthesis; Transcription regulation; Activator;
KW   DNA-binding; Nuclear protein; 3D-structure.
FT   DOMAIN      106    125       REQUIRED FOR TRANSCRIPTIONAL ACTIVATION.
FT   DNA_BIND    231    249       BASIC MOTIF.
FT   DOMAIN      253    274       LEUCINE-ZIPPER.
FT   CONFLICT    239    281       ARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG
FT                                ER -> PGVLVRESCKE (IN REF. 2).
FT   HELIX       227    276
FT   TURN        277    277
SQ   SEQUENCE   281 AA;  31310 MW;  A2155238 CRC32;
     MSEYQPSLFA LNPMGFSPLD GSKSTNENVS ASTSTAKPMV GQLIFDKFIK TEEDPIIKQD
     TPSNLDFDFA LPQTATAPDA KTVLPIPELD DAVVESFFSS STDSTPMFEY ENLEDNSKEW
     TSLFDNDIPV TTDDVSLADK AIESTEEVSL VPSNLEVSTT SFLPTPVLED AKLTQTRKVK
     KPNSVVKKSH HVGKDDESRL DHLGVVAYNR KQRSIPLSPI VPESSDPAAL KRARNTEAAR
     RSRARKLQRM KQLEDKVEEL LSKNYHLENE VARLKKLVGE R
//

PEPCOIL of GCN4_YEAST
   using a window of 28 residues


Other structures from 1 to 232 (232 residues)
   Max score: 1.283 (probability 0.21)

Prediction starts at 233
Probable coiled-coil from 233 to 281 (49 residues)
   Max score: 1.910 (probability 1.00)